Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs56245923 chr14:40228262 G/T 4.0E-6 119 41.22 42.73 23.63 KM Plot
THYM rs56250410 chr4:12544228 A/T 1.01E-6 118 38.23 57.27 12.78 KM Plot
THYM rs56255938 chr17:73467368 A/G 0.000238 117 38.23 42.25 50.1 KM Plot
THYM rs56263105 chr6:163069506 C/T 0.000281 118 46.23 27.33 25.4 KM Plot
THYM rs56275210 chr8:39935575 A/G 9.89E-5 118 40.67 48.13 28.43 KM Plot
THYM rs56304530 chr14:78331493 AAAAC/A 1.23E-5 119 22.5 50.1 37.63 KM Plot
THYM rs56330194 chr17:73462516 C/A 0.000238 117 38.23 42.25 50.1 KM Plot
THYM rs56372521 chr4:120374431 C/T 0.000264 117 38.33 45.87 25.8 KM Plot
THYM rs56384672 chr9:98506344 GA/G 3.36E-9 119 34.87 46.27 38.83 KM Plot
THYM rs56404236 chr9:97150348 A/G 8.42E-5 119 40.67 46.07 17.03 KM Plot
THYM rs56407818 chr19:29279379 G/A 5.12E-5 114 50.1 38.13 18.07 KM Plot
THYM rs56409441 chr8:39937585 C/A 9.89E-5 118 40.67 48.13 28.43 KM Plot
THYM rs56413623 chr9:97251669 C/T 7.08E-5 119 39.75 45.87 17.03 KM Plot
THYM rs56728460 chr7:29685964 A/G 5.34E-13 118 38.58 45.87 6 KM Plot
THYM rs56947971 chr19:43340779 T/C 0.000134 118 44.38 26 28.43 KM Plot